• Pseudomonas aeruginosa
• Pseudomonas putida/P. fluorescens
• Burkholderia cepcia complex (B. cepacia, B. cenocepacia, at least 8 other genomospecies)
• Cupriavidus (Ralstonia) pauculus
• Herbaspirillium
• Methylobacterium spp.
• Ralstonia pickettii, Ralstonia mannitolilytica |
• Sphingomonas paucimobilis, Sphingomonas mucosissima, other Sphingomonas spp.
• Stenotrophomonas maltophilia
• Acinetobacter baumannii, complex A. calcoaceticus
• Alcaligenes xylosoxidans, A. faecalis
• Aeromonas hydrophila, Aeromonas spp.
• Elizabethkingia anophelis, E. meningosepticum
• Legionella pneumophila |
| Non-fecal coliforms |
• Enterobacter cloacae
• Klebsiella spp.
• Pantoae aggloerans |
• Rahnella aquatilis
• Serratia liquefaciens, Serratia marcescens |
| Nontuberculous mycobacteria (NTM or Environmental Mycobacteria) |
• Mycobacterium. abscessus clade (M. abscessus, M. bollettii, M. massiliense)
• M. chelonae
• M. mucogenicum clade (M. mucogenicum, M. phociacum)
• M. fortuitum clade (M. fortuitum, M. cosmeticum, mageritiense, M. porcinum, M. septicum)
• M. immunogenum
• M. smegmatis clade (M. goodii, M. wolinskyi)
• M. aurum
• M. simiae |
• M. avium complex (M. avium, M. intracellulare, M. chimaera, M avium ss hominissuis, M. columbiense)
• M. scrofulacuem
• M parascrofulaceum
• M. xenopi
• M. arupense
• M. kansasii
• M. haemophilum
• M. nonchromogenicum clade (M. nonchromogenicum, M. triviale, M. terrae)
• M. gordonae (only among patients with severe immune deficiency) |
| Other bacteria/actinomyces |
• Microbacterium spp.
• Tsukamurella spp. |
• Rhodococcus equi, Rhodococcus spp.
• Gordonae spp. |
| Fungi |
• Yeasts (eg. Candida parapsilosis, C. tropicalis)
• Aspergillus fumigatus, A. niger |
• Fusarium spp.
• Exophiala spp. |
| Protozoa |
• Acanthamoeba spp.
• Vermamoeba vermiformis
• Naegleria spp. |
|
